In response to the compliment "thanks, you did a great job," you should say "thank you."
When someone gives you a compliment, saying "thank you" is the appropriate and polite way to acknowledge their kind words and show appreciation for the recognition of your efforts. Responding with "you're welcome" might be seen as deflecting the compliment or downplaying your achievements.
So, in this situation, a simple "thank you" is the most suitable response to graciously accept the compliment. It shows that you value the recognition and are grateful for the acknowledgment of your hard work or performance.